For this article I followed this guide, This is more a note to self, so check the article for more options.
After reinstalling the server os, one of the things I had to do was to set up Certbot again. This adds an SSL certificate and removes the scary warning and adds a padlock by your URL in the browser window.
You’ll first need to install Certbot for either Apache or Nginix
sudo apt install certbot python3-certbot-apache
Then use Certbot to create an SSl certificate
sudo certbot --apache -d example.com -d www.example.com
You’l then be asked a few questions, like your email address, agree to terms and services and whether you want to receive emails from the EFF.
In my case it initially failed due to a DNS problem amd an improperly set up vhost in Apache. Running this code ram a more verbose setup that fixed the vhost problem.
sudo certbot -v
You can then go to whynopadlock.com to check your status.

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